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Table 3 Stability evaluation of feature subsets using the Kuncheva Index, and feature ranks using the complemented Canberra distance and Spearman’s rank correlation for the proposed Greedy-Graph (GG) and Brute-Graph (BG) methods, as well as the Classification-Based (CB), Phylogeny-Based (PB), and Leave-one-Variable-out (LV) methods

From: Feature graphs for interpretable unsupervised tree ensembles: centrality, interaction, and application in disease subtyping

 

Kuncheva index

Canberra distance

Spearman’s rank correlation

 

GG

BG

CB

PB

LV

GG

CB

PB

LV

GG

CB

PB

LV

Iris

1.0000

1.0000

1.0000

1.0000

1.0000

1.0000

1.0000

1.0000

0.7977

1.0000

1.0000

1.0000

0.9191

Liver disorders

0.9642

0.9642

0.5840

1.0000

0.7676

0.9897

0.8670

1.0000

0.7267

0.9864

0.7818

1.0000

0.8184

Ecoli

0.9829

0.9829

1.0000

1.0000

0.7608

0.9848

0.8844

1.0000

0.9241

0.9920

0.9856

1.0000

0.8877

Breast tissue

0.9073

0.9073

0.6862

0.8802

0.6074

0.9414

0.7420

0.9350

0.8038

0.9725

0.8061

0.9637

0.7108

Glass

0.9637

0.9483

0.6966

0.9908

0.5323

0.9774

0.8250

0.9974

0.7712

0.9915

0.8350

0.9979

0.6327

Wine

0.9119

0.9100

0.7316

0.8726

0.2847

0.9324

0.8045

0.9118

0.6235

0.9827

0.8914

0.9672

0.2956

Lymphography

0.8838

0.8838

0.6469

0.9047

0.4852

0.9089

0.7782

0.9318

0.7251

0.9813

0.8344

0.9810

0.7482

Parkinson

0.9148

0.9024

0.4856

0.9081

0.1964

0.9632

0.7585

0.9371

0.6750

0.9883

0.5578

0.9893

0.4850

Ionosphere

0.9362

-

0.5952

0.9266

0.0639

0.9691

0.8158

0.9397

0.6554

0.9951

0.7825

0.9848

0.2718

Sonar

0.7814

-

0.3820

0.8340

0.2089

0.9259

0.7208

0.9226

0.7111

0.9879

0.4550

0.9756

0.5668

mean

0.9065

-

0.6289

0.9114

0.3761

0.9593

0.8196

0.9575

0.7414

0.9878

0.7930

0.9859

0.6336

p-value

  

<0.001

1.000

<0.001

 

<0.001

1.000

<0.001

 

<0.001

<0.001

<0.001

  1. Averages across datasets are reported, along with p-values from Wilcoxon signed-rank tests with Bonferroni correction, comparing GG against all other methods